J3_9N2C_016
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9N2C|1|16|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2C_016 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1074
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9N2C|1|16|U|1116
9N2C|1|16|A|1117
9N2C|1|16|U|1118
*
9N2C|1|16|A|1155
9N2C|1|16|G|1156
9N2C|1|16|A|1157
9N2C|1|16|C|1158
9N2C|1|16|U|1159
9N2C|1|16|G|1160
9N2C|1|16|C|1161
*
9N2C|1|16|G|1175
9N2C|1|16|A|1176
9N2C|1|16|G|1177
9N2C|1|16|G|1178
9N2C|1|16|A|1179
9N2C|1|16|A|1180
9N2C|1|16|G|1181
9N2C|1|16|G|1182
9N2C|1|16|U|1183
9N2C|1|16|G|1184
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain SB
- 30S ribosomal protein S2
- Chain SG
- 30S ribosomal protein S7
- Chain SI
- 30S ribosomal protein S9
- Chain SJ
- 30S ribosomal protein S10
- Chain SN
- 30S ribosomal protein S14
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