J3_9N2C_023

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9N2C|1|23|U|686, 9N2C|1|23|A|792, 9N2C|1|23|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2C_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0466

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9N2C|1|23|U|683
9N2C|1|23|G|684
9N2C|1|23|A|685
9N2C|1|23|U|686
9N2C|1|23|C|687
9N2C|1|23|U|688
9N2C|1|23|A|689
*
9N2C|1|23|U|773
9N2C|1|23|G|774
9N2C|1|23|G|775
*
9N2C|1|23|C|791
9N2C|1|23|A|792
9N2C|1|23|A|793
9N2C|1|23|A|794

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB

50S ribosomal protein L2

Chain Lh

50S ribosomal protein L34