J3_9N78_001

3D structure

PDB id

9N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State L

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9N78|1|L1|U|45, 9N78|1|L1|A|47, 9N78|1|L1|C|433, 9N78|1|L1|A|436, 9N78|1|L1|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N78|1|L1|A|41
9N78|1|L1|G|42
9N78|1|L1|A|43
9N78|1|L1|U|44
9N78|1|L1|U|45
9N78|1|L1|A|46
9N78|1|L1|A|47
9N78|1|L1|G|48
*
9N78|1|L1|C|431
9N78|1|L1|G|432
9N78|1|L1|C|433
9N78|1|L1|G|434
9N78|1|L1|C|435
9N78|1|L1|A|436
9N78|1|L1|A|437
9N78|1|L1|A|438
9N78|1|L1|U|439
*
9N78|1|L1|A|464
9N78|1|L1|G|465
9N78|1|L1|U|466

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain NS

Probable ATP-dependent RNA helicase DHR1

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A