J3_9N79_001

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9N79|1|L1|U|45, 9N79|1|L1|A|47, 9N79|1|L1|C|433, 9N79|1|L1|A|436, 9N79|1|L1|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N79|1|L1|A|41
9N79|1|L1|G|42
9N79|1|L1|A|43
9N79|1|L1|U|44
9N79|1|L1|U|45
9N79|1|L1|A|46
9N79|1|L1|A|47
9N79|1|L1|G|48
*
9N79|1|L1|C|431
9N79|1|L1|G|432
9N79|1|L1|C|433
9N79|1|L1|G|434
9N79|1|L1|C|435
9N79|1|L1|A|436
9N79|1|L1|A|437
9N79|1|L1|A|438
9N79|1|L1|U|439
*
9N79|1|L1|A|464
9N79|1|L1|G|465
9N79|1|L1|U|466

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L8

40S ribosomal protein S8-A

Chain L9

40S ribosomal protein S9-A

Chain NS

Probable ATP-dependent RNA helicase DHR1

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A