J3_9NJF_006

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9NJF|1|R1|U|686, 9NJF|1|R1|A|792, 9NJF|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0775

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|U|683
9NJF|1|R1|G|684
9NJF|1|R1|A|685
9NJF|1|R1|U|686
9NJF|1|R1|C|687
9NJF|1|R1|U|688
9NJF|1|R1|A|689
*
9NJF|1|R1|U|773
9NJF|1|R1|G|774
9NJF|1|R1|G|775
*
9NJF|1|R1|C|791
9NJF|1|R1|A|792
9NJF|1|R1|A|793
9NJF|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34