J3_9NJF_008

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UUUAAAGAAA*UCAC

Length

17 nucleotides

Bulged bases

9NJF|1|R1|G|1056, 9NJF|1|R1|A|1084, 9NJF|1|R1|A|1085, 9NJF|1|R1|G|1087, 9NJF|1|R1|A|1088, 9NJF|1|R1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|G|1055
9NJF|1|R1|G|1056
9NJF|1|R1|A|1057
*
9NJF|1|R1|U|1081
9NJF|1|R1|U|1082
9NJF|1|R1|U|1083
9NJF|1|R1|A|1084
9NJF|1|R1|A|1085
9NJF|1|R1|A|1086
9NJF|1|R1|G|1087
9NJF|1|R1|A|1088
9NJF|1|R1|A|1089
9NJF|1|R1|A|1090
*
9NJF|1|R1|U|1101
9NJF|1|R1|C|1102
9NJF|1|R1|A|1103
9NJF|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 10

Large ribosomal subunit protein uL10

Chain 11

Large ribosomal subunit protein uL11

Chain 16

50S ribosomal protein L16

Chain 36

50S ribosomal protein L36