J3_9NJF_011

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_011 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1339

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9NJF|1|R1|U|1344
9NJF|1|R1|C|1345
9NJF|1|R1|G|1346
9NJF|1|R1|A|1347
9NJF|1|R1|C|1348
9NJF|1|R1|C|1349
*
9NJF|1|R1|G|1382
9NJF|1|R1|A|1383
9NJF|1|R1|A|1384
9NJF|1|R1|A|1385
*
9NJF|1|R1|U|1402
9NJF|1|R1|A|1403

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23