J3_9NJF_014
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9NJF|1|R1|A|2388, 9NJF|1|R1|U|2390, 9NJF|1|R1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_014 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0969
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9NJF|1|R1|G|2282
9NJF|1|R1|C|2283
9NJF|1|R1|A|2284
*
9NJF|1|R1|U|2384
9NJF|1|R1|C|2385
9NJF|1|R1|A|2386
9NJF|1|R1|U|2387
9NJF|1|R1|A|2388
9NJF|1|R1|G|2389
9NJF|1|R1|U|2390
9NJF|1|R1|G|2391
9NJF|1|R1|A|2392
9NJF|1|R1|U|2393
9NJF|1|R1|C|2394
9NJF|1|R1|C|2395
*
9NJF|1|R1|G|2421
9NJF|1|R1|C|2422
9NJF|1|R1|U|2423
9NJF|1|R1|C|2424
9NJF|1|R1|A|2425
9NJF|1|R1|A|2426
9NJF|1|R1|C|2427
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L15
- Chain 27
- 50S ribosomal protein L27
- Chain 33
- Large ribosomal subunit protein bL33
- Chain 35
- Large ribosomal subunit protein bL35
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: