J3_9NJF_015

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAUCC*GGAGGUUAG*CAUAAG

Length

22 nucleotides

Bulged bases

9NJF|1|R1|U|2321, 9NJF|1|R1|U|2334, 9NJF|1|R1|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|C|2295
9NJF|1|R1|U|2296
9NJF|1|R1|A|2297
9NJF|1|R1|A|2298
9NJF|1|R1|U|2299
9NJF|1|R1|C|2300
9NJF|1|R1|C|2301
*
9NJF|1|R1|G|2315
9NJF|1|R1|G|2316
9NJF|1|R1|A|2317
9NJF|1|R1|G|2318
9NJF|1|R1|G|2319
9NJF|1|R1|U|2320
9NJF|1|R1|U|2321
9NJF|1|R1|A|2322
9NJF|1|R1|G|2323
*
9NJF|1|R1|C|2332
9NJF|1|R1|A|2333
9NJF|1|R1|U|2334
9NJF|1|R1|A|2335
9NJF|1|R1|A|2336
9NJF|1|R1|G|2337

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 27

50S ribosomal protein L27

Chain 5

50S ribosomal protein L5

Chain R2

5S ribosomal RNA; 5S rRNA