J3_9NJF_016

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9NJF|1|R1|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0969

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|C|2517
9NJF|1|R1|A|2518
9NJF|1|R1|U|2519
9NJF|1|R1|C|2520
*
9NJF|1|R1|G|2545
9NJF|1|R1|U|2546
9NJF|1|R1|A|2547
*
9NJF|1|R1|U|2561
9NJF|1|R1|U|2562
9NJF|1|R1|U|2563
9NJF|1|R1|A|2564
9NJF|1|R1|A|2565
9NJF|1|R1|A|2566
9NJF|1|R1|G|2567

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

Large ribosomal subunit protein uL14

Chain 3

50S ribosomal protein L3