J3_9NJF_019
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9NJF|1|R2|G|13, 9NJF|1|R2|U|14, 9NJF|1|R2|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_019 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2148
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9NJF|1|R2|G|10
9NJF|1|R2|C|11
9NJF|1|R2|C|12
9NJF|1|R2|G|13
9NJF|1|R2|U|14
9NJF|1|R2|A|15
9NJF|1|R2|G|16
*
9NJF|1|R2|C|68
9NJF|1|R2|G|69
9NJF|1|R2|C|70
*
9NJF|1|R2|G|106
9NJF|1|R2|G|107
9NJF|1|R2|A|108
9NJF|1|R2|A|109
9NJF|1|R2|C|110
Current chains
- Chain R2
- 5S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 25
- Large ribosomal subunit protein bL25
- Chain 27
- 50S ribosomal protein L27
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
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