J3_9NJF_022

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_022 not in the Motif Atlas

Geometric match to J3_6CZR_016

Geometric discrepancy: 0.2118

The information below is about J3_6CZR_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.4

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

9NJF|1|R3|C|586
9NJF|1|R3|G|587
9NJF|1|R3|G|588
*
9NJF|1|R3|C|651
9NJF|1|R3|U|652
9NJF|1|R3|U|653
9NJF|1|R3|G|654
*
9NJF|1|R3|C|754
9NJF|1|R3|G|755

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain sl

Small ribosomal subunit protein uS12

Chain so

Small ribosomal subunit protein uS15

Chain sq

Small ribosomal subunit protein uS17