J3_9NJF_027
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_027 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1412
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NJF|1|R3|U|943
9NJF|1|R3|G|944
9NJF|1|R3|G|945
9NJF|1|R3|A|946
*
9NJF|1|R3|U|1235
9NJF|1|R3|A|1236
9NJF|1|R3|C|1237
*
9NJF|1|R3|G|1337
9NJF|1|R3|G|1338
9NJF|1|R3|A|1339
9NJF|1|R3|A|1340
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain T
- Transfer RNA; tRNA
- Chain Y
- Probable ATP-binding protein YbiT
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
- Chain sm
- 30S ribosomal protein S13
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