J3_9NJF_030

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NJF|1|R3|U|1212, 9NJF|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1442

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NJF|1|R3|C|990
9NJF|1|R3|U|991
9NJF|1|R3|U|992
9NJF|1|R3|G|993
9NJF|1|R3|A|994
9NJF|1|R3|C|995
9NJF|1|R3|A|996
9NJF|1|R3|U|997
*
9NJF|1|R3|A|1044
9NJF|1|R3|C|1045
9NJF|1|R3|A|1046
9NJF|1|R3|G|1047
*
9NJF|1|R3|C|1210
9NJF|1|R3|U|1211
9NJF|1|R3|U|1212
9NJF|1|R3|A|1213
9NJF|1|R3|C|1214
9NJF|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14