J3_9NJF_035
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9NJF|1|R3|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_035 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1373
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9NJF|1|R3|U|1116
9NJF|1|R3|A|1117
9NJF|1|R3|U|1118
*
9NJF|1|R3|A|1155
9NJF|1|R3|G|1156
9NJF|1|R3|A|1157
9NJF|1|R3|C|1158
9NJF|1|R3|U|1159
9NJF|1|R3|G|1160
9NJF|1|R3|C|1161
*
9NJF|1|R3|G|1175
9NJF|1|R3|A|1176
9NJF|1|R3|G|1177
9NJF|1|R3|G|1178
9NJF|1|R3|A|1179
9NJF|1|R3|A|1180
9NJF|1|R3|G|1181
9NJF|1|R3|G|1182
9NJF|1|R3|U|1183
9NJF|1|R3|G|1184
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sb
- Small ribosomal subunit protein uS2
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
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