J3_9NKL_004

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NKL|1|R1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_004 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0928

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NKL|1|R1|G|297
9NKL|1|R1|G|298
9NKL|1|R1|A|299
9NKL|1|R1|A|300
9NKL|1|R1|G|301
*
9NKL|1|R1|C|316
9NKL|1|R1|G|317
9NKL|1|R1|C|318
9NKL|1|R1|G|319
9NKL|1|R1|A|320
9NKL|1|R1|U|321
9NKL|1|R1|A|322
9NKL|1|R1|C|323
9NKL|1|R1|A|324
9NKL|1|R1|G|325
*
9NKL|1|R1|C|337
9NKL|1|R1|G|338
9NKL|1|R1|U|339
9NKL|1|R1|A|340
9NKL|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4