J3_9NKL_005

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUAG*CUGG*CAAA

Length

16 nucleotides

Bulged bases

9NKL|1|R1|U|686, 9NKL|1|R1|A|792, 9NKL|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|U|683
9NKL|1|R1|G|684
9NKL|1|R1|A|685
9NKL|1|R1|U|686
9NKL|1|R1|C|687
9NKL|1|R1|U|688
9NKL|1|R1|A|689
9NKL|1|R1|G|690
*
9NKL|1|R1|C|772
9NKL|1|R1|U|773
9NKL|1|R1|G|774
9NKL|1|R1|G|775
*
9NKL|1|R1|C|791
9NKL|1|R1|A|792
9NKL|1|R1|A|793
9NKL|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34