J3_9NKL_010

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_010 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1339

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9NKL|1|R1|U|1344
9NKL|1|R1|C|1345
9NKL|1|R1|G|1346
9NKL|1|R1|A|1347
9NKL|1|R1|C|1348
9NKL|1|R1|C|1349
*
9NKL|1|R1|G|1382
9NKL|1|R1|A|1383
9NKL|1|R1|A|1384
9NKL|1|R1|A|1385
*
9NKL|1|R1|U|1402
9NKL|1|R1|A|1403

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23