J3_9NKL_015

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9NKL|1|R1|A|2518, 9NKL|1|R1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_015 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.2144

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9NKL|1|R1|C|2517
9NKL|1|R1|A|2518
9NKL|1|R1|U|2519
9NKL|1|R1|C|2520
*
9NKL|1|R1|G|2545
9NKL|1|R1|U|2546
9NKL|1|R1|A|2547
*
9NKL|1|R1|U|2561
9NKL|1|R1|U|2562
9NKL|1|R1|U|2563
9NKL|1|R1|A|2564
9NKL|1|R1|A|2565
9NKL|1|R1|A|2566
9NKL|1|R1|G|2567

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14