J3_9NKL_030

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCACGGAAGUUU*GAAUGUGC*GAACCGUGAG

Length

30 nucleotides

Bulged bases

9NKL|1|R3|G|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R3|C|998
9NKL|1|R3|C|999
9NKL|1|R3|A|1000
9NKL|1|R3|C|1001
9NKL|1|R3|G|1002
9NKL|1|R3|G|1003
9NKL|1|R3|A|1004
9NKL|1|R3|A|1005
9NKL|1|R3|G|1006
9NKL|1|R3|U|1007
9NKL|1|R3|U|1008
9NKL|1|R3|U|1009
*
9NKL|1|R3|G|1020
9NKL|1|R3|A|1021
9NKL|1|R3|A|1022
9NKL|1|R3|U|1023
9NKL|1|R3|G|1024
9NKL|1|R3|U|1025
9NKL|1|R3|G|1026
9NKL|1|R3|C|1027
*
9NKL|1|R3|G|1034
9NKL|1|R3|A|1035
9NKL|1|R3|A|1036
9NKL|1|R3|C|1037
9NKL|1|R3|C|1038
9NKL|1|R3|G|1039
9NKL|1|R3|U|1040
9NKL|1|R3|G|1041
9NKL|1|R3|A|1042
9NKL|1|R3|G|1043

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14