J3_9NL5_005

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NL5|1|R1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL5_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0578

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NL5|1|R1|G|297
9NL5|1|R1|G|298
9NL5|1|R1|A|299
9NL5|1|R1|A|300
9NL5|1|R1|G|301
*
9NL5|1|R1|C|316
9NL5|1|R1|G|317
9NL5|1|R1|C|318
9NL5|1|R1|G|319
9NL5|1|R1|A|320
9NL5|1|R1|U|321
9NL5|1|R1|A|322
9NL5|1|R1|C|323
9NL5|1|R1|A|324
9NL5|1|R1|G|325
*
9NL5|1|R1|C|337
9NL5|1|R1|G|338
9NL5|1|R1|U|339
9NL5|1|R1|A|340
9NL5|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4