J3_9NL5_006

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUAG*CUGG*CAAA

Length

16 nucleotides

Bulged bases

9NL5|1|R1|U|686, 9NL5|1|R1|A|792, 9NL5|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|U|683
9NL5|1|R1|G|684
9NL5|1|R1|A|685
9NL5|1|R1|U|686
9NL5|1|R1|C|687
9NL5|1|R1|U|688
9NL5|1|R1|A|689
9NL5|1|R1|G|690
*
9NL5|1|R1|C|772
9NL5|1|R1|U|773
9NL5|1|R1|G|774
9NL5|1|R1|G|775
*
9NL5|1|R1|C|791
9NL5|1|R1|A|792
9NL5|1|R1|A|793
9NL5|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34