J3_9NL5_008

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAGAAAG*CUCAC

Length

19 nucleotides

Bulged bases

9NL5|1|R1|U|1083, 9NL5|1|R1|A|1084, 9NL5|1|R1|A|1088, 9NL5|1|R1|A|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|1055
9NL5|1|R1|G|1056
9NL5|1|R1|A|1057
*
9NL5|1|R1|U|1081
9NL5|1|R1|U|1082
9NL5|1|R1|U|1083
9NL5|1|R1|A|1084
9NL5|1|R1|A|1085
9NL5|1|R1|A|1086
9NL5|1|R1|G|1087
9NL5|1|R1|A|1088
9NL5|1|R1|A|1089
9NL5|1|R1|A|1090
9NL5|1|R1|G|1091
*
9NL5|1|R1|C|1100
9NL5|1|R1|U|1101
9NL5|1|R1|C|1102
9NL5|1|R1|A|1103
9NL5|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36