J3_9NL5_030

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGACAU*ACAG*CUUACGA

Length

20 nucleotides

Bulged bases

9NL5|1|R3|U|1212, 9NL5|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R3|U|989
9NL5|1|R3|C|990
9NL5|1|R3|U|991
9NL5|1|R3|U|992
9NL5|1|R3|G|993
9NL5|1|R3|A|994
9NL5|1|R3|C|995
9NL5|1|R3|A|996
9NL5|1|R3|U|997
*
9NL5|1|R3|A|1044
9NL5|1|R3|C|1045
9NL5|1|R3|A|1046
9NL5|1|R3|G|1047
*
9NL5|1|R3|C|1210
9NL5|1|R3|U|1211
9NL5|1|R3|U|1212
9NL5|1|R3|A|1213
9NL5|1|R3|C|1214
9NL5|1|R3|G|1215
9NL5|1|R3|A|1216

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14