J3_9NL5_031

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACGGAAGUUUU*AGAAUGUGC*GAACCGUG

Length

29 nucleotides

Bulged bases

9NL5|1|R3|A|1000, 9NL5|1|R3|U|1040

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R3|C|999
9NL5|1|R3|A|1000
9NL5|1|R3|C|1001
9NL5|1|R3|G|1002
9NL5|1|R3|G|1003
9NL5|1|R3|A|1004
9NL5|1|R3|A|1005
9NL5|1|R3|G|1006
9NL5|1|R3|U|1007
9NL5|1|R3|U|1008
9NL5|1|R3|U|1009
9NL5|1|R3|U|1010
*
9NL5|1|R3|A|1019
9NL5|1|R3|G|1020
9NL5|1|R3|A|1021
9NL5|1|R3|A|1022
9NL5|1|R3|U|1023
9NL5|1|R3|G|1024
9NL5|1|R3|U|1025
9NL5|1|R3|G|1026
9NL5|1|R3|C|1027
*
9NL5|1|R3|G|1034
9NL5|1|R3|A|1035
9NL5|1|R3|A|1036
9NL5|1|R3|C|1037
9NL5|1|R3|C|1038
9NL5|1|R3|G|1039
9NL5|1|R3|U|1040
9NL5|1|R3|G|1041

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14