J3_9NL6_005

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NL6|1|R1|U|321, 9NL6|1|R1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL6_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0669

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NL6|1|R1|G|297
9NL6|1|R1|G|298
9NL6|1|R1|A|299
9NL6|1|R1|A|300
9NL6|1|R1|G|301
*
9NL6|1|R1|C|316
9NL6|1|R1|G|317
9NL6|1|R1|C|318
9NL6|1|R1|G|319
9NL6|1|R1|A|320
9NL6|1|R1|U|321
9NL6|1|R1|A|322
9NL6|1|R1|C|323
9NL6|1|R1|A|324
9NL6|1|R1|G|325
*
9NL6|1|R1|C|337
9NL6|1|R1|G|338
9NL6|1|R1|U|339
9NL6|1|R1|A|340
9NL6|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4