J3_9NL6_006

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9NL6|1|R1|U|686, 9NL6|1|R1|A|792, 9NL6|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL6_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0662

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9NL6|1|R1|U|683
9NL6|1|R1|G|684
9NL6|1|R1|A|685
9NL6|1|R1|U|686
9NL6|1|R1|C|687
9NL6|1|R1|U|688
9NL6|1|R1|A|689
*
9NL6|1|R1|U|773
9NL6|1|R1|G|774
9NL6|1|R1|G|775
*
9NL6|1|R1|C|791
9NL6|1|R1|A|792
9NL6|1|R1|A|793
9NL6|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34