J3_9NL6_029

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*UGUGC*GAAC

Length

13 nucleotides

Bulged bases

9NL6|1|R3|U|1025

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R3|G|1003
9NL6|1|R3|A|1004
9NL6|1|R3|A|1005
9NL6|1|R3|G|1006
*
9NL6|1|R3|U|1023
9NL6|1|R3|G|1024
9NL6|1|R3|U|1025
9NL6|1|R3|G|1026
9NL6|1|R3|C|1027
*
9NL6|1|R3|G|1034
9NL6|1|R3|A|1035
9NL6|1|R3|A|1036
9NL6|1|R3|C|1037

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14