J3_9NL7_029

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NL7|1|R3|U|1212, 9NL7|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL7_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1379

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NL7|1|R3|C|990
9NL7|1|R3|U|991
9NL7|1|R3|U|992
9NL7|1|R3|G|993
9NL7|1|R3|A|994
9NL7|1|R3|C|995
9NL7|1|R3|A|996
9NL7|1|R3|U|997
*
9NL7|1|R3|A|1044
9NL7|1|R3|C|1045
9NL7|1|R3|A|1046
9NL7|1|R3|G|1047
*
9NL7|1|R3|C|1210
9NL7|1|R3|U|1211
9NL7|1|R3|U|1212
9NL7|1|R3|A|1213
9NL7|1|R3|C|1214
9NL7|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14