J3_9NLB_005

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NLB|1|R1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLB_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0868

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLB|1|R1|G|297
9NLB|1|R1|G|298
9NLB|1|R1|A|299
9NLB|1|R1|A|300
9NLB|1|R1|G|301
*
9NLB|1|R1|C|316
9NLB|1|R1|G|317
9NLB|1|R1|C|318
9NLB|1|R1|G|319
9NLB|1|R1|A|320
9NLB|1|R1|U|321
9NLB|1|R1|A|322
9NLB|1|R1|C|323
9NLB|1|R1|A|324
9NLB|1|R1|G|325
*
9NLB|1|R1|C|337
9NLB|1|R1|G|338
9NLB|1|R1|U|339
9NLB|1|R1|A|340
9NLB|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4