J3_9NLB_016

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9NLB|1|R1|A|2518, 9NLB|1|R1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLB_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1345

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9NLB|1|R1|C|2517
9NLB|1|R1|A|2518
9NLB|1|R1|U|2519
9NLB|1|R1|C|2520
*
9NLB|1|R1|G|2545
9NLB|1|R1|U|2546
9NLB|1|R1|A|2547
*
9NLB|1|R1|U|2561
9NLB|1|R1|U|2562
9NLB|1|R1|U|2563
9NLB|1|R1|A|2564
9NLB|1|R1|A|2565
9NLB|1|R1|A|2566
9NLB|1|R1|G|2567

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14