J3_9NLB_030

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACGGAAGUUUU*AGAAUGUGC*GAACCGUGAG

Length

32 nucleotides

Bulged bases

9NLB|1|R3|G|1003, 9NLB|1|R3|U|1025, 9NLB|1|R3|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R3|C|998
9NLB|1|R3|C|999
9NLB|1|R3|A|1000
9NLB|1|R3|C|1001
9NLB|1|R3|G|1002
9NLB|1|R3|G|1003
9NLB|1|R3|A|1004
9NLB|1|R3|A|1005
9NLB|1|R3|G|1006
9NLB|1|R3|U|1007
9NLB|1|R3|U|1008
9NLB|1|R3|U|1009
9NLB|1|R3|U|1010
*
9NLB|1|R3|A|1019
9NLB|1|R3|G|1020
9NLB|1|R3|A|1021
9NLB|1|R3|A|1022
9NLB|1|R3|U|1023
9NLB|1|R3|G|1024
9NLB|1|R3|U|1025
9NLB|1|R3|G|1026
9NLB|1|R3|C|1027
*
9NLB|1|R3|G|1034
9NLB|1|R3|A|1035
9NLB|1|R3|A|1036
9NLB|1|R3|C|1037
9NLB|1|R3|C|1038
9NLB|1|R3|G|1039
9NLB|1|R3|U|1040
9NLB|1|R3|G|1041
9NLB|1|R3|A|1042
9NLB|1|R3|G|1043

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14

Chain ss

30S ribosomal protein S19