J3_9NLE_005

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NLE|1|R1|U|321, 9NLE|1|R1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLE_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0764

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLE|1|R1|G|297
9NLE|1|R1|G|298
9NLE|1|R1|A|299
9NLE|1|R1|A|300
9NLE|1|R1|G|301
*
9NLE|1|R1|C|316
9NLE|1|R1|G|317
9NLE|1|R1|C|318
9NLE|1|R1|G|319
9NLE|1|R1|A|320
9NLE|1|R1|U|321
9NLE|1|R1|A|322
9NLE|1|R1|C|323
9NLE|1|R1|A|324
9NLE|1|R1|G|325
*
9NLE|1|R1|C|337
9NLE|1|R1|G|338
9NLE|1|R1|U|339
9NLE|1|R1|A|340
9NLE|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4