J3_9NLE_029

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAUCCACGGAAGUU*AAUGUGC*GAACCGUGAGAC

Length

35 nucleotides

Bulged bases

9NLE|1|R3|A|1000, 9NLE|1|R3|G|1003, 9NLE|1|R3|U|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R3|G|993
9NLE|1|R3|A|994
9NLE|1|R3|C|995
9NLE|1|R3|A|996
9NLE|1|R3|U|997
9NLE|1|R3|C|998
9NLE|1|R3|C|999
9NLE|1|R3|A|1000
9NLE|1|R3|C|1001
9NLE|1|R3|G|1002
9NLE|1|R3|G|1003
9NLE|1|R3|A|1004
9NLE|1|R3|A|1005
9NLE|1|R3|G|1006
9NLE|1|R3|U|1007
9NLE|1|R3|U|1008
*
9NLE|1|R3|A|1021
9NLE|1|R3|A|1022
9NLE|1|R3|U|1023
9NLE|1|R3|G|1024
9NLE|1|R3|U|1025
9NLE|1|R3|G|1026
9NLE|1|R3|C|1027
*
9NLE|1|R3|G|1034
9NLE|1|R3|A|1035
9NLE|1|R3|A|1036
9NLE|1|R3|C|1037
9NLE|1|R3|C|1038
9NLE|1|R3|G|1039
9NLE|1|R3|U|1040
9NLE|1|R3|G|1041
9NLE|1|R3|A|1042
9NLE|1|R3|G|1043
9NLE|1|R3|A|1044
9NLE|1|R3|C|1045

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14