J3_9NLE_033
3D structure
- PDB id
- 9NLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9NLE|1|R3|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLE_033 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1239
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9NLE|1|R3|U|1116
9NLE|1|R3|A|1117
9NLE|1|R3|U|1118
*
9NLE|1|R3|A|1155
9NLE|1|R3|G|1156
9NLE|1|R3|A|1157
9NLE|1|R3|C|1158
9NLE|1|R3|U|1159
9NLE|1|R3|G|1160
9NLE|1|R3|C|1161
*
9NLE|1|R3|G|1175
9NLE|1|R3|A|1176
9NLE|1|R3|G|1177
9NLE|1|R3|G|1178
9NLE|1|R3|A|1179
9NLE|1|R3|A|1180
9NLE|1|R3|G|1181
9NLE|1|R3|G|1182
9NLE|1|R3|U|1183
9NLE|1|R3|G|1184
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sb
- Small ribosomal subunit protein uS2
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
Coloring options: