J3_9NLF_006

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9NLF|1|R1|U|686, 9NLF|1|R1|A|792, 9NLF|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0727

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLF|1|R1|U|683
9NLF|1|R1|G|684
9NLF|1|R1|A|685
9NLF|1|R1|U|686
9NLF|1|R1|C|687
9NLF|1|R1|U|688
9NLF|1|R1|A|689
*
9NLF|1|R1|U|773
9NLF|1|R1|G|774
9NLF|1|R1|G|775
*
9NLF|1|R1|C|791
9NLF|1|R1|A|792
9NLF|1|R1|A|793
9NLF|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34