J3_9NLF_007
3D structure
- PDB id
- 9NLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLF_007 not in the Motif Atlas
- Homologous match to J3_5J7L_039
- Geometric discrepancy: 0.075
- The information below is about J3_5J7L_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9NLF|1|R1|C|698
9NLF|1|R1|A|699
9NLF|1|R1|G|700
*
9NLF|1|R1|C|732
9NLF|1|R1|G|733
9NLF|1|R1|A|734
9NLF|1|R1|A|735
9NLF|1|R1|C|736
*
9NLF|1|R1|G|760
9NLF|1|R1|A|761
9NLF|1|R1|U|762
9NLF|1|R1|G|763
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L2
Coloring options: