J3_9NLF_008

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGGA*UUAAAGAAA*UCACUG

Length

20 nucleotides

Bulged bases

9NLF|1|R1|A|1054, 9NLF|1|R1|A|1084, 9NLF|1|R1|A|1088, 9NLF|1|R1|C|1104, 9NLF|1|R1|U|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|C|1053
9NLF|1|R1|A|1054
9NLF|1|R1|G|1055
9NLF|1|R1|G|1056
9NLF|1|R1|A|1057
*
9NLF|1|R1|U|1082
9NLF|1|R1|U|1083
9NLF|1|R1|A|1084
9NLF|1|R1|A|1085
9NLF|1|R1|A|1086
9NLF|1|R1|G|1087
9NLF|1|R1|A|1088
9NLF|1|R1|A|1089
9NLF|1|R1|A|1090
*
9NLF|1|R1|U|1101
9NLF|1|R1|C|1102
9NLF|1|R1|A|1103
9NLF|1|R1|C|1104
9NLF|1|R1|U|1105
9NLF|1|R1|G|1106

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36