J3_9NLF_019

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAUUG*CAGC

Length

15 nucleotides

Bulged bases

9NLF|1|R3|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R3|G|46
9NLF|1|R3|C|47
*
9NLF|1|R3|G|361
9NLF|1|R3|G|362
9NLF|1|R3|A|363
9NLF|1|R3|A|364
9NLF|1|R3|U|365
9NLF|1|R3|A|366
9NLF|1|R3|U|367
9NLF|1|R3|U|368
9NLF|1|R3|G|369
*
9NLF|1|R3|C|392
9NLF|1|R3|A|393
9NLF|1|R3|G|394
9NLF|1|R3|C|395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16