J3_9NLF_029

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NLF|1|R3|U|1212, 9NLF|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1466

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NLF|1|R3|C|990
9NLF|1|R3|U|991
9NLF|1|R3|U|992
9NLF|1|R3|G|993
9NLF|1|R3|A|994
9NLF|1|R3|C|995
9NLF|1|R3|A|996
9NLF|1|R3|U|997
*
9NLF|1|R3|A|1044
9NLF|1|R3|C|1045
9NLF|1|R3|A|1046
9NLF|1|R3|G|1047
*
9NLF|1|R3|C|1210
9NLF|1|R3|U|1211
9NLF|1|R3|U|1212
9NLF|1|R3|A|1213
9NLF|1|R3|C|1214
9NLF|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14