J3_9NLH_005

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NLH|1|R1|U|321, 9NLH|1|R1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLH_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0621

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLH|1|R1|G|297
9NLH|1|R1|G|298
9NLH|1|R1|A|299
9NLH|1|R1|A|300
9NLH|1|R1|G|301
*
9NLH|1|R1|C|316
9NLH|1|R1|G|317
9NLH|1|R1|C|318
9NLH|1|R1|G|319
9NLH|1|R1|A|320
9NLH|1|R1|U|321
9NLH|1|R1|A|322
9NLH|1|R1|C|323
9NLH|1|R1|A|324
9NLH|1|R1|G|325
*
9NLH|1|R1|C|337
9NLH|1|R1|G|338
9NLH|1|R1|U|339
9NLH|1|R1|A|340
9NLH|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4