J3_9NLH_019

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

9NLH|1|R3|C|48, 9NLH|1|R3|A|50, 9NLH|1|R3|A|51, 9NLH|1|R3|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLH|1|R3|G|46
9NLH|1|R3|C|47
9NLH|1|R3|C|48
9NLH|1|R3|U|49
9NLH|1|R3|A|50
9NLH|1|R3|A|51
9NLH|1|R3|C|52
*
9NLH|1|R3|G|359
9NLH|1|R3|G|360
9NLH|1|R3|G|361
9NLH|1|R3|G|362
9NLH|1|R3|A|363
9NLH|1|R3|A|364
9NLH|1|R3|U|365
9NLH|1|R3|A|366
9NLH|1|R3|U|367
9NLH|1|R3|U|368
9NLH|1|R3|G|369
*
9NLH|1|R3|C|392
9NLH|1|R3|A|393
9NLH|1|R3|G|394
9NLH|1|R3|C|395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16