J3_9NLJ_005

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NLJ|1|R1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1216

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLJ|1|R1|G|297
9NLJ|1|R1|G|298
9NLJ|1|R1|A|299
9NLJ|1|R1|A|300
9NLJ|1|R1|G|301
*
9NLJ|1|R1|C|316
9NLJ|1|R1|G|317
9NLJ|1|R1|C|318
9NLJ|1|R1|G|319
9NLJ|1|R1|A|320
9NLJ|1|R1|U|321
9NLJ|1|R1|A|322
9NLJ|1|R1|C|323
9NLJ|1|R1|A|324
9NLJ|1|R1|G|325
*
9NLJ|1|R1|C|337
9NLJ|1|R1|G|338
9NLJ|1|R1|U|339
9NLJ|1|R1|A|340
9NLJ|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4