J3_9NLJ_006

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUAG*CUGG*CAAA

Length

16 nucleotides

Bulged bases

9NLJ|1|R1|U|686, 9NLJ|1|R1|A|792, 9NLJ|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|U|683
9NLJ|1|R1|G|684
9NLJ|1|R1|A|685
9NLJ|1|R1|U|686
9NLJ|1|R1|C|687
9NLJ|1|R1|U|688
9NLJ|1|R1|A|689
9NLJ|1|R1|G|690
*
9NLJ|1|R1|C|772
9NLJ|1|R1|U|773
9NLJ|1|R1|G|774
9NLJ|1|R1|G|775
*
9NLJ|1|R1|C|791
9NLJ|1|R1|A|792
9NLJ|1|R1|A|793
9NLJ|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34