J3_9NLJ_008

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAU*AUUUAAAGAAAGC*GCUCAC

Length

23 nucleotides

Bulged bases

9NLJ|1|R1|U|1083, 9NLJ|1|R1|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|G|1055
9NLJ|1|R1|G|1056
9NLJ|1|R1|A|1057
9NLJ|1|R1|U|1058
*
9NLJ|1|R1|A|1080
9NLJ|1|R1|U|1081
9NLJ|1|R1|U|1082
9NLJ|1|R1|U|1083
9NLJ|1|R1|A|1084
9NLJ|1|R1|A|1085
9NLJ|1|R1|A|1086
9NLJ|1|R1|G|1087
9NLJ|1|R1|A|1088
9NLJ|1|R1|A|1089
9NLJ|1|R1|A|1090
9NLJ|1|R1|G|1091
9NLJ|1|R1|C|1092
*
9NLJ|1|R1|G|1099
9NLJ|1|R1|C|1100
9NLJ|1|R1|U|1101
9NLJ|1|R1|C|1102
9NLJ|1|R1|A|1103
9NLJ|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6