J3_9NLJ_016

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9NLJ|1|R1|A|2518, 9NLJ|1|R1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1256

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9NLJ|1|R1|C|2517
9NLJ|1|R1|A|2518
9NLJ|1|R1|U|2519
9NLJ|1|R1|C|2520
*
9NLJ|1|R1|G|2545
9NLJ|1|R1|U|2546
9NLJ|1|R1|A|2547
*
9NLJ|1|R1|U|2561
9NLJ|1|R1|U|2562
9NLJ|1|R1|U|2563
9NLJ|1|R1|A|2564
9NLJ|1|R1|A|2565
9NLJ|1|R1|A|2566
9NLJ|1|R1|G|2567

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3