J3_9NLJ_026
3D structure
- PDB id
- 9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with Uup-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLJ_026 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0959
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NLJ|1|R3|C|936
9NLJ|1|R3|A|937
9NLJ|1|R3|A|938
9NLJ|1|R3|G|939
*
9NLJ|1|R3|C|1344
9NLJ|1|R3|U|1345
9NLJ|1|R3|A|1346
9NLJ|1|R3|G|1347
9NLJ|1|R3|U|1348
9NLJ|1|R3|A|1349
9NLJ|1|R3|A|1350
*
9NLJ|1|R3|U|1372
9NLJ|1|R3|G|1373
9NLJ|1|R3|A|1374
9NLJ|1|R3|A|1375
9NLJ|1|R3|U|1376
9NLJ|1|R3|A|1377
9NLJ|1|R3|C|1378
9NLJ|1|R3|G|1379
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
Coloring options: