J3_9NLJ_030

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGACAU*ACAG*CUUACGA

Length

20 nucleotides

Bulged bases

9NLJ|1|R3|U|1212, 9NLJ|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|U|989
9NLJ|1|R3|C|990
9NLJ|1|R3|U|991
9NLJ|1|R3|U|992
9NLJ|1|R3|G|993
9NLJ|1|R3|A|994
9NLJ|1|R3|C|995
9NLJ|1|R3|A|996
9NLJ|1|R3|U|997
*
9NLJ|1|R3|A|1044
9NLJ|1|R3|C|1045
9NLJ|1|R3|A|1046
9NLJ|1|R3|G|1047
*
9NLJ|1|R3|C|1210
9NLJ|1|R3|U|1211
9NLJ|1|R3|U|1212
9NLJ|1|R3|A|1213
9NLJ|1|R3|C|1214
9NLJ|1|R3|G|1215
9NLJ|1|R3|A|1216

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14