J3_9NLJ_031

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACGGAAGUUU*GAAUGUGC*GAACCGUGAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|C|998
9NLJ|1|R3|C|999
9NLJ|1|R3|A|1000
9NLJ|1|R3|C|1001
9NLJ|1|R3|G|1002
9NLJ|1|R3|G|1003
9NLJ|1|R3|A|1004
9NLJ|1|R3|A|1005
9NLJ|1|R3|G|1006
9NLJ|1|R3|U|1007
9NLJ|1|R3|U|1008
9NLJ|1|R3|U|1009
*
9NLJ|1|R3|G|1020
9NLJ|1|R3|A|1021
9NLJ|1|R3|A|1022
9NLJ|1|R3|U|1023
9NLJ|1|R3|G|1024
9NLJ|1|R3|U|1025
9NLJ|1|R3|G|1026
9NLJ|1|R3|C|1027
*
9NLJ|1|R3|G|1034
9NLJ|1|R3|A|1035
9NLJ|1|R3|A|1036
9NLJ|1|R3|C|1037
9NLJ|1|R3|C|1038
9NLJ|1|R3|G|1039
9NLJ|1|R3|U|1040
9NLJ|1|R3|G|1041
9NLJ|1|R3|A|1042
9NLJ|1|R3|G|1043

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sn

Small ribosomal subunit protein uS14