J3_9NLQ_006

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9NLQ|1|R1|U|686, 9NLQ|1|R1|A|792, 9NLQ|1|R1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0701

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLQ|1|R1|U|683
9NLQ|1|R1|G|684
9NLQ|1|R1|A|685
9NLQ|1|R1|U|686
9NLQ|1|R1|C|687
9NLQ|1|R1|U|688
9NLQ|1|R1|A|689
*
9NLQ|1|R1|U|773
9NLQ|1|R1|G|774
9NLQ|1|R1|G|775
*
9NLQ|1|R1|C|791
9NLQ|1|R1|A|792
9NLQ|1|R1|A|793
9NLQ|1|R1|A|794

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34